IMPC
- Release: 10.1
- Published: 26 June 2019
Statistical Package
- PhenStat
- Version: 2.20.0
Genome Assembly
- Mus musculus
- Version: GRCm38
Summary
- Number of phenotyped genes: 5,861
- Number of phenotyped mutant lines: 6,255
- Number of phenotype calls: 70,692
Data access
- Ftp site: ftp://ftp.ebi.ac.uk/pub/databases/impc/release-10.1
- RESTful interfaces: APIs
Highlights
Data release 10.1
- Includes additional Acoustic Startle and Pre-pulse Inhibition (PPI) derived parameters for % Pre-pulse inhibition - Global. The formula was updated to relax derivation requirements. Specifically the update allows derivations to be calculated using 3 % PPI parameters rather than requiring all 4.
- Updates to automated methods of detecting anomolous or missing data resulted in some extraneous datapoints being removed.
- The embryonic day associated to Viability E14.5-E15.5 Secondary Screen was updated from E14.5 to E15.5
- The process for generating genotype to phenotype associations for categorical parameters has been changed. A phenotpye call is made in the case where the data analysis for each individual sex is not significant, but analysis using the combined data from both sexes is significant.
- Fixed issue analyzing Combined retina parameter resulting in more phenotype calls.
Data Reports
Lines and Specimens
Phenotyping Center | Mutant Lines | Baseline Mice | Mutant Mice |
---|---|---|---|
JAX | 1,226 | 8,413 | 35,252 |
TCP | 546 | 7,104 | 24,892 |
HMGU | 311 | 3,173 | 5,770 |
KMPC | 43 | 869 | 1,067 |
MARC | 232 | 1,877 | 3,776 |
MRC Harwell | 596 | 5,893 | 15,626 |
RBRC | 96 | 2,023 | 1,859 |
ICS | 223 | 2,325 | 3,554 |
WTSI | 1,329 | 4,540 | 21,316 |
BCM | 597 | 4,572 | 17,476 |
UC Davis | 1,056 | 4,156 | 23,749 |
Experimental Data and Quality Checks
Data Type | QC passed | QC failed | issues |
---|---|---|---|
categorical | 14,917,864 | 3,835 * | 16,974 * |
unidimensional | 11,116,529 | 43,508 * | 293,835 * |
time series | 13,444,019 | 2,615 * | 11 * |
text | 192,175 | 11,124 * | 45,751 * |
image record | 469,960 | 0 | 0 |
* Excluded from statistical analysis.
Distribution of Phenotype Annotations
Status
Overall
By Center
More charts and status information are available from iMits.
Phenotype Associations
88: | 0 calls |
192: | 0 calls |
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111: | 0 calls |
234: | 0 calls |
115: | 0 calls |
511: | 0 calls |
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Previous Releases
- Release 10.0 notes
- Release 9.2 notes
- Release 9.1 notes
- Release 8.0 notes
- Release 7.0 notes
- Release 6.1 notes
- Release 6.0 notes
- Release 5.0 notes
- Release 4.3 notes
- Release 4.2 notes
- Release 4.0 notes
- Release 3.4 notes
- Release 3.3 notes
- Release 3.2 notes
- Release 3.1 notes
- Release 3.0 notes
- Release 2.0 notes
- Release 1.1 notes
- Release 1.0 notes