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IMPC
- Release: 9.1
- Published: 7 November 2018
Statistical Package
- PhenStat
- Version: 2.14.1
Genome Assembly
- Mus musculus
- Version: GRCm38
Summary
- Number of phenotyped genes: 5,570
- Number of phenotyped mutant lines: 5,957
- Number of phenotype calls: 57,797
Data access
- Ftp site: ftp://ftp.ebi.ac.uk/pub/databases/impc/release-9.1
- RESTful interfaces: APIs
Highlights
Data release 9.1
Release notes:
Represents a major data release. Changes include:
- Around 500 additional genes
- More 3I data imported
- Exclusion of embryo parameters that are marked as do not annotate in IMPReSS (specifically, 'Responsive to tactile stimuli' and 'Spontaneous movement')
- Removal of spurious X-Rray ontology associations where the data were marked as unobservable
Note: Data release 9.0 has been intentionally and permanantly removed due to data irregularities
Data Reports
Lines and Specimens
| Phenotyping Center | Mutant Lines | Baseline Mice | Mutant Mice |
|---|---|---|---|
| JAX | 1,148 | 7,958 | 33,234 |
| TCP | 529 | 6,821 | 23,766 |
| HMGU | 289 | 2,917 | 5,273 |
| KMPC | 37 | 739 | 827 |
| MARC | 232 | 1,877 | 3,776 |
| MRC Harwell | 562 | 5,704 | 14,734 |
| RBRC | 92 | 1,967 | 1,803 |
| ICS | 211 | 2,201 | 3,375 |
| WTSI | 1,328 | 4,563 | 21,297 |
| BCM | 521 | 4,219 | 15,699 |
| UC Davis | 1,008 | 3,762 | 23,220 |
Experimental Data and Quality Checks
| Data Type | QC passed | QC failed | issues |
|---|---|---|---|
| categorical | 13,312,831 | 3,734 * | 17,736 * |
| unidimensional | 10,063,922 | 36,892 * | 282,348 * |
| time series | 12,236,102 | 2,570 * | 11 * |
| text | 180,098 | 11,124 * | 45,653 * |
| image record | 396,400 | 0 | 0 |
* Excluded from statistical analysis.
Distribution of Phenotype Annotations
Status
Overall
By Center
More charts and status information are available from iMits.