To assess visible morphological defects in E9.5 embryos from lethal strains
If capturing images please attempt to capture left, right, front, and back views of the embryo but if this is not possible left, right is sufficient. Feel free to take higher magnification views to show morphologies of interest.
Tam somite method for counting somites should be adopted:
Tam scoring system uses a forelimb range of 8 to 15 somite pairs resulting in E9.5 embryos ranging between 25 to 26 somite pairs.
All genotypes should be collected using validated assays.
Y chromosome assay required for X-linked lethal strains.
Embryos may be processed for Histopathology or 3D Imaging
Version | Type | Req. Upload | Req. Analysis | Annotation | Increment | Option | Ontology Options | Derived | Unit | Data Type | |
---|---|---|---|---|---|---|---|---|---|---|---|
Alive IMPC_GEL_001_001 | 1.0 | simpleParameter | yesno | TEXT | |||||||
Scored IMPC_GEL_002_001 | 1.0 | simpleParameter | yesno | TEXT | |||||||
Cardiovascular System IMPC_GEL_003_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Cardiovascular Development IMPC_GEL_004_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Vascular Development IMPC_GEL_005_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Pericardium Morphology IMPC_GEL_006_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Failure heart looping IMPC_GEL_007_002 | 2.0 | simpleParameter | ![]() |
yesunobservableno | TEXT | ||||||
Absent heartbeat IMPC_GEL_008_002 | 2.0 | simpleParameter | ![]() |
yesunobservableno | TEXT | ||||||
Embryogenesis Phenotype IMPC_GEL_009_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Abnormal Gastrulation IMPC_GEL_010_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Embryo turning IMPC_GEL_011_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Incomplete embryo turning IMPC_GEL_012_002 | 2.0 | simpleParameter | ![]() |
yesunobservableno | TEXT | ||||||
Extraembryonic tissue morphology IMPC_GEL_013_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Allantois Morphology IMPC_GEL_014_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Vitelline vasculature morphology IMPC_GEL_015_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Vitelline vein morphology IMPC_GEL_016_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Pale yolk sac IMPC_GEL_017_002 | 2.0 | simpleParameter | ![]() |
yesunobservableno | TEXT | ||||||
Visceral yolk sac morphology IMPC_GEL_018_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Chorioallantoic fusion IMPC_GEL_019_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Developmental Patterning IMPC_GEL_020_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Left-right axis patterning IMPC_GEL_021_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Direction of heart looping IMPC_GEL_022_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Somite development IMPC_GEL_023_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Branchial arch morphology IMPC_GEL_024_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Neural fold mophology IMPC_GEL_025_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Neural tube morphology/development IMPC_GEL_026_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Neural tube closure IMPC_GEL_027_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Forebrain IMPC_GEL_028_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Midbrain IMPC_GEL_029_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Hindbrain IMPC_GEL_030_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Spinal cord IMPC_GEL_031_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Embryo Size IMPC_GEL_032_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Tail bud morphology IMPC_GEL_033_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Integument IMPC_GEL_034_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Skin Appearance IMPC_GEL_035_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Pallor IMPC_GEL_036_002 | 2.0 | simpleParameter | ![]() |
yesunobservableno | TEXT | ||||||
Blebs IMPC_GEL_037_002 | 2.0 | simpleParameter | ![]() |
yesunobservableno | TEXT | ||||||
Limb Bud Morphology IMPC_GEL_038_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Vision/Eye IMPC_GEL_039_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Eye development IMPC_GEL_040_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Hearing/Vestibular/Ear IMPC_GEL_041_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Otic vesicle morphology IMPC_GEL_042_001 | 1.0 | simpleParameter | ![]() |
normalabnormalunobservable | TEXT | ||||||
Comment on image IMPC_GEL_043_001 | 1.0 | simpleParameter | TEXT | ||||||||
Images IMPC_GEL_044_001 | 1.0 | seriesMediaParameter | Minimum: 1 | IMAGE | |||||||
Severely Dysmorphic IMPC_GEL_055_001 | 1.2 | simpleParameter | ![]() |
noyesunobservable | TEXT |
Version | Type | Req. Upload | Req. Analysis | Annotation | Increment | Option | Ontology Options | Derived | Unit | Data Type | |
---|---|---|---|---|---|---|---|---|---|---|---|
Experimenter ID IMPC_GEL_045_001 | 1.0 | procedureMetadata | ![]() |
TEXT | |||||||
Equipment ID IMPC_GEL_046_001 | 1.0 | procedureMetadata | ![]() |
TEXT | |||||||
Equipment Manufacturer IMPC_GEL_047_001 | 1.0 | procedureMetadata | ![]() |
TEXT | |||||||
Equipment Model IMPC_GEL_048_001 | 1.0 | procedureMetadata | ![]() |
TEXT | |||||||
Fixative IMPC_GEL_049_001 | 1.0 | procedureMetadata | ![]() |
TEXT | |||||||
Time of Dissection IMPC_GEL_050_001 | 1.0 | procedureMetadata | ![]() |
TIME | |||||||
Somite Stage IMPC_GEL_051_001 | 1.0 | procedureMetadata | ![]() |
INT | |||||||
Time of dark cycle start IMPC_GEL_052_001 | 1.0 | procedureMetadata | ![]() |
TIME | |||||||
Time of dark cycle end IMPC_GEL_053_001 | 1.0 | procedureMetadata | ![]() |
TIME | |||||||
Date equipment last calibrated IMPC_GEL_054_001 | 1.1 | procedureMetadata | DATE |